Slot: scaf_logsum
The sum of the (length*log(length)) of all scaffolds, times some constant. Increase the contiguity, the score will increase
URI: emi:scaf_logsum Alias: scaf_logsum
Inheritance
- metagenome_assembly_parameter
- scaf_logsum
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MetagenomeAssembly | A workflow execution activity that converts sequencing reads into an assemble... | no |
| MetatranscriptomeAssembly | no |
Properties
- Range: Float
Identifier and Mapping Information
Schema Source
- from schema: https://www.earthmetabolome.org/emi-ontology-linkml/
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | emi:scaf_logsum |
| native | emi:scaf_logsum |
LinkML Source
name: scaf_logsum
description: The sum of the (length*log(length)) of all scaffolds, times some constant. Increase
the contiguity, the score will increase
from_schema: https://www.earthmetabolome.org/emi-ontology-linkml/
rank: 1000
is_a: metagenome_assembly_parameter
alias: scaf_logsum
domain_of:
- MetagenomeAssembly
- MetatranscriptomeAssembly
range: float