Slot: metagenome_assembly_parameter

• NOTE: this is an abstract slot and should not be populated directly

URI: emi:metagenome_assembly_parameter Alias: metagenome_assembly_parameter

Inheritance

• metagenome_assembly_parameter
  • asm_score
  • scaffolds
  • scaf_logsum
  • scaf_powsum
  • scaf_max
  • scaf_bp
  • scaf_n50
  • scaf_n90
  • scaf_l50
  • scaf_l90
  • scaf_n_gt50k
  • scaf_l_gt50k
  • scaf_pct_gt50k
  • contigs
  • contig_bp
  • ctg_n50
  • ctg_l50
  • ctg_n90
  • ctg_l90
  • ctg_logsum
  • ctg_powsum
  • ctg_max
  • gap_pct
  • gc_std
  • gc_avg
  • num_input_reads
  • num_aligned_reads

Properties

• Range: String

Identifier and Mapping Information

Schema Source

• from schema: https://www.earthmetabolome.org/emi-ontology-linkml/

Mappings

Mapping Type	Mapped Value
self	emi:metagenome_assembly_parameter
native	emi:metagenome_assembly_parameter

LinkML Source

name: metagenome_assembly_parameter
from_schema: https://www.earthmetabolome.org/emi-ontology-linkml/
rank: 1000
abstract: true
alias: metagenome_assembly_parameter
range: string