Slot: EMSL Biosample Identifiers (emsl_biosample_identifiers)

A list of identifiers for the biosample from the EMSL database. This is used to link the biosample, as modeled by NMDC, to the biosample in the planned EMSL NEXUS database.

URI: emi:emsl_biosample_identifiers Alias: emsl_biosample_identifiers

Inheritance

• alternative_identifiers
  • external_database_identifiers
    • biosample_identifiers
      • emsl_biosample_identifiers [ emsl_identifiers]

Applicable Classes

Name	Description	Modifies Slot
Biosample	Biological source material which can be characterized by an experiment	no

Properties

• Range: ExternalIdentifier

• Multivalued: True

• Regex pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$

TODOs

• removed "planned" once NEXUS is online
• determine real expansion for emsl prefix

Identifier and Mapping Information

Schema Source

• from schema: https://www.earthmetabolome.org/emi-ontology-linkml/

Mappings

Mapping Type	Mapped Value
self	emi:emsl_biosample_identifiers
native	emi:emsl_biosample_identifiers

LinkML Source

name: emsl_biosample_identifiers
description: A list of identifiers for the biosample from the EMSL database.  This
  is used to link the biosample, as modeled by NMDC, to the biosample in the planned
  EMSL NEXUS database.
title: EMSL Biosample Identifiers
todos:
- removed "planned" once NEXUS is online
- determine real expansion for emsl prefix
from_schema: https://www.earthmetabolome.org/emi-ontology-linkml/
rank: 1000
is_a: biosample_identifiers
mixins:
- emsl_identifiers
alias: emsl_biosample_identifiers
domain_of:
- Biosample
range: external_identifier
multivalued: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$