Slot: ctg_n50
Given a set of contigs, each with its own length, the N50 count is defined as the smallest number_of_contigs whose length sum makes up half of genome size.
URI: emi:ctg_n50 Alias: ctg_n50
Inheritance
- metagenome_assembly_parameter
- ctg_n50
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MetagenomeAssembly | A workflow execution activity that converts sequencing reads into an assemble... | no |
| MetatranscriptomeAssembly | no |
Properties
- Range: Float
Identifier and Mapping Information
Schema Source
- from schema: https://www.earthmetabolome.org/emi-ontology-linkml/
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | emi:ctg_n50 |
| native | emi:ctg_n50 |
LinkML Source
name: ctg_n50
description: Given a set of contigs, each with its own length, the N50 count is defined
as the smallest number_of_contigs whose length sum makes up half of genome size.
from_schema: https://www.earthmetabolome.org/emi-ontology-linkml/
rank: 1000
is_a: metagenome_assembly_parameter
alias: ctg_n50
domain_of:
- MetagenomeAssembly
- MetatranscriptomeAssembly
range: float