Slot: pcr conditions (pcr_cond)

Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'

URI: MIXS:0000049 Alias: pcr_cond

Inheritance

• sequencing_field
  • pcr_cond

Applicable Classes

Name	Description	Modifies Slot
LibraryPreparation		yes

Properties

• Range: TextValue

Aliases

• pcr conditions

Examples

Value
initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35

Identifier and Mapping Information

Annotations

property	value
expected_value	initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles

Schema Source

• from schema: https://www.earthmetabolome.org/emi-ontology-linkml/

Mappings

Mapping Type	Mapped Value
self	MIXS:0000049
native	emi:pcr_cond

LinkML Source

name: pcr_cond
annotations:
  expected_value:
    tag: expected_value
    value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes;total cycles
description: Description of reaction conditions and components of PCR in the form
  of 'initial denaturation:94degC_1.5min; annealing=...'
title: pcr conditions
examples:
- value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35
from_schema: https://www.earthmetabolome.org/emi-ontology-linkml/
aliases:
- pcr conditions
rank: 1000
is_a: sequencing field
string_serialization: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
  elongation:degrees_minutes;total cycles
slot_uri: MIXS:0000049
alias: pcr_cond
domain_of:
- LibraryPreparation
range: TextValue
multivalued: false